Marker Name: Vf_Mt5g039000_001 |
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| Map Name | SNP-based consensus genetic map: 2016 | |
| Marker Type | SNP | |
| Linkage Group & Location cM | Linkage Group: group-Vf_Chr_1 Location cM: 142.01 | |
| Parents SNP Call | NV643-4 call: G:G NV648-1 call: G:G | |
| Target Sequence | CATTTCTAGGGAAGAGATCTATGTCATTTTCATCCGGAATCGAACTCGGAGAAGAAGCCA ATATAGCTGAGGAAGATTTATCAGATGATGGATCACAAGC[S]GGTGAGAAGAAAAGGAG GCTCAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGCTTGGTAACAAGCTAGA GCCTGAGAGGAAAATGCAGCTTG |
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| SNP Position | 100 | |
| NV643-3 allele (sequence) | CATTTCTAGGGAAGAGATCTATGTCATTTTCATCCGGAATCGAACTCGGAGAAGAAGCCA ATATAGCTGAGGAAGATTTATCAGATGATGGATCACAAGCCGGTGAGAAGAAAAGGAGGC TCAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGCTTGGTAACAAGCTAGAGC CTGAGAGGAAAATGCAGCTTG |
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| NV648-1 allele (sequence) | CATTTCTAGGGAAGAGATCTATGTCATTTTCATCCGGAATCGAACTCGGAGAAGAAGCCA ATATAGCTGAGGAAGATTTATCAGATGATGGATCACAAGCGGGTGAGAAGAAAAGGAGGC TCAACATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAGCTTGGTAACAAGCTAGAGC CTGAGAGGAAAATGCAGCTTG |
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| EH/PIC | 0.381 | |
| Reference | Webb et al. 2016 link | |
NCBI Alignment Result (Nucleotide BLAST) |
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| Sequence Similarity | NCBI Accession Number: XM_003613594.3 NCBI Gene Symbol: LOC11411421 | |
| Gene Description | homeobox-leucine zipper protein ATHB-13 | |
| Similar Organisms | Medicago truncatula | |
| Alignment Scores | Identity Percentage: 92.04 Mismatches: 16 Open Gaps: 0 Evalue: 1.17E-072 | |